Author

J. L. Darcy

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Approach:statistical model· 3 Research Focus:clustering· 2 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Organism:human· 1 Organism:plant (other)· 1

Frequent Co-Authors

C. A. Lozupone· 2 shared S. O. I. Swift· 2 shared A. A. Amend· 1 shared A. D. Washburne· 1 shared A. S. Amend· 1 shared B. A. Perry· 1 shared G. L. Zahn· 1 shared G. M. Cobian· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersMicrobiology

C. A. Lozupone

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

specificity: an R package for analysis of feature specificity to environmental and higher dimensional variables, applied to microbiome species data

J. L. Darcy, A. S. Amend, S. O. I. Swift, P. S. Sommers, C. A. Lozupone

The paper introduces an R package called specificity to analyze feature specificity to environmental and higher-dimensional variables, applied to microbiome species data to reveal hidden patterns.

bioRxiv · Nov 6, 2021Microbiology

Fungal communities living within leaves of native Hawaiian dicots are structured by landscape-scale variables as well as by host plants

J. L. Darcy, G. M. Cobian, S. O. I. Swift, G. L. Zahn, B. A. Perry, A. A. Amend

The paper examines foliar endophytic fungi in native Hawaiian dicots, finding that their communities are shaped by geographic distance, host plant phylogeny, and environmental factors like evapotranspiration.

bioRxiv · Jun 26, 2020Ecology

A phylogenetic model for the recruitment of species into microbial communities and application to studies of thehuman microbiome

J. L. Darcy, A. D. Washburne, M. S. Robeson, T. Prest, S. K. Schmidt, C. A. Lozupone

The paper develops a phylogenetic model to study microbial community assembly and applies it to human microbiome data, finding underdispersion in most cases.

bioRxiv · Jan 28, 2020Microbiology