Author

J. M. Warren

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 6

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Assay:DNA methylation· 3 Approach:experimental assay· 3 Organism:plant (other)· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:phylogenetics / evolution· 2 Assay:whole-genome sequencing· 2

Frequent Co-Authors

D. B. Sloan· 5 shared J. Gatesy· 2 shared M. P. Simmons· 2 shared M. S. Springer· 2 shared A. C. Christensen· 1 shared A. K. Broz· 1 shared A. Martinez-Hottovy· 1 shared C. Elowsky· 1 shared

Activity by Year

2018-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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5 shared papersEvolutionary Biology

D. B. Sloan

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6 papers

Recent·Most cited

Aminoacyl-tRNA synthetase evolution within the dynamic tripartite translation system of plant cells

D. B. Sloan, R. A. DeTar, J. M. Warren

This study examines aminoacyl-tRNA synthetase (aaRS) evolution in plants, finding that organellar aaRSs are slightly more conserved than cytosolic ones, likely due to high translational demands in chloroplasts.

bioRxiv · Dec 12, 2022Evolutionary Biology

Iterative deletion of gene trees detects extreme biases in distance-based phylogenomic coalescent analyses

J. Gatesy, D. B. Sloan, J. M. Warren, M. P. Simmons, M. S. Springer

The paper introduces PCBL, a method to assess gene tree influence in distance-based coalescent analyses, revealing biases that affect phylogenetic inference.

bioRxiv · Mar 8, 2022 · PreprintEvolutionary Biology

Rewiring of aminoacyl-tRNA synthetase localization and interactions in plants with extensive mitochondrial tRNA gene loss

J. M. Warren, A. K. Broz, A. Martinez-Hottovy, C. Elowsky, A. C. Christensen, D. B. Sloan

The paper examines how aminoacyl-tRNA synthetase localization and interactions evolve in plants with extensive mitochondrial tRNA gene loss, finding some aaRSs retarget to mitochondria while others maintain cytosolic localization despite tRNA replacement.

bioRxiv · Jan 27, 2022Evolutionary Biology

Rapid shifts in mitochondrial tRNA import in a plant lineage with extensive mitochondrial tRNA gene loss

J. M. Warren, T. Salinas-Giege, D. A. Triant, D. R. Taylor, L. Drouard, D. B. Sloan

The paper investigates mitochondrial tRNA import in plants with extensive mt-tRNA gene loss, finding that nuclear-encoded tRNAs replace mitochondrial ones even after recent gene loss.

bioRxiv · Jul 12, 2021Evolutionary Biology

Hopeful monsters: Unintended sequencing of famously malformed mite mitochondrial tRNAs reveals widespread expression and processing of sense-antisense pairs

J. M. Warren, D. B. Sloan

The paper sequenced mite mitochondrial tRNAs, confirming their expression and revealing widespread sense-antisense tRNA pairs.

bioRxiv · Sep 8, 2020Evolutionary Biology

Partitioned coalescence support reveals biases in species-tree methods and detects gene trees that determine phylogenomic conflicts

J. Gatesy, D. Sloan, J. M. Warren, R. H. Baker, M. P. Simmons, M. S. Springer

This paper introduces partitioned coalescence support (PCS) to analyze phylogenomic conflicts and assess biases in species-tree methods across multiple datasets.

bioRxiv · Nov 4, 2018Evolutionary Biology