Strain-level identification of bacterial tomato pathogens directly from metagenomic sequences
M. E. Mechan Llontop, P. Sharma, M. Aguilera Flores, S. Yang, J. Pollok, L. Tian, C. Huang, S. Rideout, L. S. Heath, S. Li, B. A. Vinatzer
The paper tests metagenomic sequencing with ONT MinION for strain-level identification of bacterial tomato pathogens, achieving success with Pto but showing challenges with field samples.
bioRxiv · Sep 23, 2019Microbiology