Author

Jakob Nybo Andersen

University of Copenhagen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Assay:metagenomics· 1

Frequent Co-Authors

Iva KovačićiD· 1 shared Joseph NesmeiD· 1 shared Lars Juhl JenseniD· 1 shared Lasse Schnell DanielseniD· 1 shared Marc Pielies AvelliiD· 1 shared Pau Piera LíndeziD· 1 shared Simon RasmusseniD· 1 shared Søren Johannes SørenseniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Iva KovačićORCID

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1 paper

Recent·Most cited

Accurate plasmid reconstruction from metagenomics data using assembly-alignment graphs and contrastive learning

Pau Piera Líndez, Lasse Schnell Danielsen, Iva Kovačić, Marc Pielies Avelli, Joseph Nesme, Lars Juhl Jensen, Jakob Nybo Andersen, Søren Johannes Sørensen, Simon Rasmussen

PlasMAAG improves plasmid reconstruction from metagenomics data using assembly-alignment graphs and contrastive learning, outperforming existing methods in accuracy and efficiency.

Nature Biotechnology · Feb 4, 2026Peer-reviewedBioinformatics