Joseph Nesme

This study identifies molecular convergence in Baltic Sea pipefish populations despite differing genomic structures and species relationships.

The paper presents a high-quality genome assembly of the sea stickleback and reveals chromosomal fusions and fissions that reshape understanding of karyotype evolution in sticklebacks.

This study uses multi-omics to show that a microalgal microbiome inhibits Vibrio anguillarum through iron sequestration via siderophore production.

This study reconstructs the genomic history of the extinct giant deer, revealing genetic vulnerabilities linked to its extinction.

PlasMAAG improves plasmid reconstruction from metagenomics data using assembly-alignment graphs and contrastive learning, outperforming existing methods in accuracy and efficiency.

This study examines how climate change affects nitrogen-fixing microbial communities in subarctic feather mosses across a precipitation gradient, showing reduced cyanobacterial activity under warmer and drier conditions.

This study shows that sociality in spiders is linked to lower germline mutation rates, despite small population sizes and reduced selection pressure.

The paper uses machine learning to predict plasmid permissiveness in wastewater microbiomes from 16S rDNA sequences, showing moderate-to-strong correlations with experimental data.

The paper analyzes gut metagenomes from pigs to investigate co-occurrence patterns of antibiotic resistance genes (ARGs) with metal and biocide resistance genes, finding non-random phylogenetic associations.