Eukfinder: a pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data.
Dandan Zhao, Dayana Elizabeth Salas-Leiva, Shelby K. Williams, Katherine A. Dunn, Jason D. Shao, Andrew J. Roger
Eukfinder is a pipeline that recovers high-quality eukaryotic microbial genomes from metagenomic data, outperforming existing tools in assembling near-complete genomes without a reference.
mBio · Apr 10, 2025Peer-reviewedBioinformatics