ONTdeCIPHER: An amplicon-based nanopore sequencing pipeline for tracking pathogen variants
Emira Chérif, Fatou Thiam, Mohammad Salma, Georgina A. Rivera‐Ingraham, Fabienne Justy, Théo Deremarque, Damien Breugnot, Jean-Claude Doudou, Rodolphe E. Gozlan, Marine Combe
ONTdeCIPHER is a nanopore sequencing pipeline for analyzing pathogen variants, providing tools for preprocessing, variant calling, and phylogenetic analysis of SARS-CoV-2 and other pathogens.
Bioinformatics · Jan 24, 2022Peer-reviewedBioinformatics