Author

Jennifer Gardy

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Epidemiology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 4 Research Focus:phylogenetics / evolution· 3 Approach:statistical model· 2 Approach:Bayesian inference· 1 Approach:deep learning· 1 Organism:human· 1 Research Focus:transcription & RNA processing· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Caroline ColijniD· 4 shared Xavier Didelot· 3 shared Anamaria Crisan· 1 shared Christophe Fraser· 1 shared Hollie-Ann Hatherell· 1 shared James C. Johnston· 1 shared Patrick Tang· 1 shared Sue L Pollock· 1 shared

Activity by Year

2014-2016 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 23 mutual co-author links

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4 shared papersGenomics

Caroline ColijnORCID

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Author profile →

4 papers

Recent·Most cited

Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks

Xavier Didelot, Christophe Fraser, Jennifer Gardy, Caroline Colijn

This paper develops a method to infer transmission trees from phylogenies in partially sampled and ongoing outbreaks by incorporating within-host genetic diversity and unsampled intermediates.

bioRxiv · Jul 22, 2016Epidemiology

Declaring a tuberculosis outbreak over with genomic epidemiology

Hollie-Ann Hatherell, Xavier Didelot, Sue L Pollock, Patrick Tang, Anamaria Crisan, James C. Johnston, Caroline Colijn, Jennifer Gardy

The paper develops a method to infer transmission times from pathogen genomes and applies it to declare a tuberculosis outbreak over.

Microbial Genomics · May 31, 2016Peer-reviewedGenomics

Phylogenetic tree shapes resolve disease transmission patterns

Jennifer Gardy, Caroline Colijn

The paper uses phylogenetic tree shapes to predict disease transmission patterns from genome data, finding that different transmission dynamics produce distinct tree structures.

Evolution, Medicine, and Public Health · Jun 9, 2014Peer-reviewedEvolutionary Biology

Bayesian inference of infectious disease transmission from whole genome sequence data

Xavier Didelot, Jennifer Gardy, Caroline Colijn

This paper develops a Bayesian method to reconstruct disease outbreaks from genomic data, finding that even with high substitution rates, uncertainty remains in transmission inference.

Molecular Biology and Evolution · Apr 8, 2014Peer-reviewedGenomics