Author

Jennifer Westoby

University of Cambridge

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:scRNA-seq· 2 Approach:benchmark study· 1 Organism:mouse· 1 Approach:simulation· 1

Frequent Co-Authors

Anne C. Ferguson‐SmithiD· 2 shared Martin HembergiD· 2 shared Marcela K. Sjöberg-HerreraiD· 1 shared Pavel ArtemoviD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 5 mutual co-author links

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2 shared papersBioinformatics

Anne C. Ferguson‐SmithORCID

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2 papers

Recent·Most cited

Obstacles to Studying Alternative Splicing Using scRNA-seq

Jennifer Westoby, Pavel Artemov, Martin Hemberg, Anne C. Ferguson‐Smith

This study shows that high dropout rates in scRNA-seq hinder alternative splicing analysis, while low isoform quantification errors in mice reduce this obstacle.

bioRxiv · Oct 8, 2019 · PreprintBioinformatics

Simulation based benchmarking of isoform quantification in single-cell RNA-seq

Jennifer Westoby, Marcela K. Sjöberg-Herrera, Anne C. Ferguson‐Smith, Martin Hemberg

The paper benchmarks isoform quantification tools on simulated single-cell RNA-seq data, finding good performance on SMARTer and SMART-seq2 but poor on Drop-seq, and highlights biological insights from real data.

Genome biology · Nov 7, 2018Peer-reviewedBioinformatics