Author

Jingqi Li

Chinese University of Hong Kong

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 2 Organism:human· 2 Research Focus:deconvolution· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Yumei LiiD· 2 shared Haitao ZhangiD· 1 shared Irwin KingiD· 1 shared Jiayi LiiD· 1 shared Wei Li· 1 shared Xinyuan LiuiD· 1 shared Yang SheniD· 1 shared Yimin FaniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Yumei LiORCID

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2 papers

Recent·Most cited

cfMIND: A read-level methylation framework for accurate non- invasive disease detection using cell-free DNA

Jingqi Li, Z Liu, Haitao Zhang, Yuyang Zhang, Wei Li, Yumei Li

cfMIND improves non-invasive disease detection by analyzing read-level methylation signals from cell-free DNA, achieving high accuracy even at low sequencing depth and across diverse cancers.

bioRxiv · May 16, 2026 · PreprintBioinformatics

cfDecon: Accurate and Interpretable methylation-based cell type deconvolution for cell-free DNA

Yixuan Wang, Jiayi Li, Jingqi Li, Yang Shen, Yuhan Huang, Xinyuan Liu, Yimin Fan, Irwin King, Yumei Li, Yu Li

cfDecon improves cfDNA deconvolution accuracy and interpretability using deep learning, outperforming existing methods in simulation and clinical datasets.

Lecture notes in computer science · Jan 1, 2025Peer-reviewedBioinformatics