Author

John C McEwan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 3 Assay:whole-genome sequencing· 3 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Rudiger Brauning· 3 shared Ken G Dodds· 2 shared Alan F McCulloch· 1 shared Benoit Auvray· 1 shared Cindy T Lawley· 1 shared Gemma M Jenkins· 1 shared James F Ward· 1 shared James Kijas· 1 shared

Activity by Year

2015-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersGenomics

Rudiger Brauning

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3 papers

Recent·Most cited

Copy number variants in the sheep genome detected using multiple approaches

Gemma M Jenkins, Michael E Goddard, Mik Black, Rudiger Brauning, Benoit Auvray, Ken G Dodds, James Kijas, Noelle Cockett, John C McEwan

This study identifies 3,488 CNVRs in sheep using multiple methods, finding that whole genome sequencing provides the highest validation rate for CNVs.

bioRxiv · Apr 26, 2016Genomics

Construction of relatedness matrices using genotyping-by-sequencing data

Ken G Dodds, John C McEwan, Rudiger Brauning, Rayna M Anderson, Tracey C van Stijn, Theodor Kristjánsson, Shannon M Clarke

The paper develops a method to estimate relatedness from genotyping-by-sequencing data, accounting for sequencing depth and providing unbiased estimates.

BMC Genomics · Dec 9, 2015Peer-reviewedGenetics

Utilization of high throughput genome sequencing technology for large scale single nucleotide polymorphism discovery in red deer and Canadian elk

Rudiger Brauning, Paul J Fisher, Alan F McCulloch, Russell J Smithies, James F Ward, Matthew J Bixley, Cindy T Lawley, Suzanne J Rowe, John C McEwan

This paper uses high throughput genome sequencing to discover SNPs in red deer and Canadian elk, validating their utility for genetic improvement.

bioRxiv · Nov 4, 2015 · PreprintGenomics