Author

Jonathan Kenichi Ahrlind

Science for Life Laboratory

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Biophysics· 1

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:perturbation response prediction· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Erik R. LindahliD· 1 shared Ivan NisseniD· 1 shared Rebecca J. HowardiD· 1 shared Samuel Eriksson LidbrinkiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperBiophysics

Erik R. LindahlORCID

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1 paper

Recent·Most cited

Several multiple sequence alignment perturbation methods enhance AlphaFold3 sampling of alternative protein states

Samuel Eriksson Lidbrink, Ivan Nissen, Jonathan Kenichi Ahrlind, Rebecca J. Howard, Erik R. Lindahl

The paper evaluates MSA perturbation methods on AlphaFold3 to improve sampling of alternative protein states, finding significant improvements in TM-scores compared to unperturbed AF3.

bioRxiv · Apr 3, 2026 · PreprintBiophysics