Author

Jonathan Xu

University of Pennsylvania

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

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Approach:deep learning· 1 Organism:human· 1 Research Focus:spatial domain detection· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Michelle Jiang· 1 shared Nancy Ruonan ZhangiD· 1 shared Shunsuke KogaiD· 1 shared Zhi HuangiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Michelle Jiang

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1 paper

Recent·Most cited

SpatialFinder: A Human-in-the-Loop Vision-Language Framework for Prioritizing High-Value Regions in Spatial Transcriptomics

Jonathan Xu, Michelle Jiang, Shunsuke Koga, Nancy Ruonan Zhang, Zhi Huang

SpatialFinder uses a vision-language model with human feedback to prioritize high-value regions in H&E slides for spatial transcriptomics, improving ROI selection accuracy.

Frontiers in Bioinformatics · Apr 15, 2026Peer-reviewedBioinformatics