Author

Josephine Fisher

Gilead Sciences (United Kingdom)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:imputation· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Li LiiD· 2 shared Matthew A JacksoniD· 2 shared Oliver Wood· 2 shared Adam T. BraithwaiteiD· 1 shared Christopher PaluchiD· 1 shared Lynne A. MurrayiD· 1 shared Lynne Murray· 1 shared Samuel J. BullersiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 22 mutual co-author links

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2 shared papersBioinformatics

Li LiORCID

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2 papers

Recent·Most cited

Machine Learning Predictions Surpass Individual mRNAs as a Proxy of Single-cell Protein Expression

Josephine Fisher, Oliver Wood, Samuel J. Bullers, Lynne Murray, Li Li, Matthew A Jackson

The paper compares machine learning models for predicting single-cell protein expression from RNA-seq data to mRNA levels, finding that models outperform mRNA as a proxy.

Genome biology · Apr 22, 2026Peer-reviewedBioinformatics

Intra- and intercellular immune responses across diverse in vitro stimuli and inflammatory disease

Oliver Wood, Adam T. Braithwaite, Josephine Fisher, Li Li, Lynne A. Murray, Christopher Paluch, Matthew A Jackson

The paper compares immune responses to 11 in vitro stimuli in human immune cells and links them to inflammatory diseases, showing both shared and unique pathways and limitations in modeling disease.

bioRxiv · Jun 27, 2025 · PreprintImmunology