Matthew A Jackson

The paper compares machine learning models for predicting single-cell protein expression from RNA-seq data to mRNA levels, finding that models outperform mRNA as a proxy.

The paper compares immune responses to 11 in vitro stimuli in human immune cells and links them to inflammatory diseases, showing both shared and unique pathways and limitations in modeling disease.

This paper introduces an optimized IgA-Seq protocol and a novel probability-based scoring method to accurately identify and quantify commensal gut microbiota bound by host immunoglobulins.

The paper identifies 31 host genetic loci influencing gut microbiome composition through GWAS and suggests causal effects in inflammatory diseases.