Author

Juan Velasquez

University of South Florida

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Assay:protein structure· 2 Approach:statistical model· 2 Organism:multiple species· 1 Research Focus:protein folding & dynamics· 1

Frequent Co-Authors

Taseef RahmaniD· 2 shared Sebastien Ghent· 1 shared Vladimir Nikolaevich UverskyiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersBiophysics

Taseef RahmanORCID

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2 papers

Recent·Most cited

Cross-taxon Coarse-Grained IDP Simulations Enable Architecture-Independent Generalization

Juan Velasquez, Taseef Rahman

The paper introduces BENDER, a dataset of IDP sequences across 13 taxonomic groups, and shows cross-taxonomic generalization of conformational ensemble predictions.

bioRxiv · Aug 31, 2026 · PreprintBiophysics

Do AI Structure Predictors Capture Bound-State Disorder? A Benchmark on Fuzzy Protein Complexes

Juan Velasquez, Sebastien Ghent, Vladimir Nikolaevich Uversky, Taseef Rahman

This paper benchmarks AI structure predictors on fuzzy protein complexes, finding they consistently violate 30% of NOE restraints and show poor helicity correlation with thermodynamic expectations.

bioRxiv · Jun 8, 2026 · PreprintBiophysics