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Juba O. Ahmed

Institut National de la Recherche Scientifique

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Bioinformatics· 1

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Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:metagenomics· 1 Approach:statistical model· 1

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Frédéric J. VeyrieriD· 1 shared Gnéré Coulibaly· 1 shared Luke B. HarrisoniD· 1 shared

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Frédéric J. VeyrierORCID

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BioinformaticsmSystemsPeer-reviewedOct 9, 2026

Comparative performance of reference-based metagenomic tools to identify species-level taxa among families of bacteria: benchmarking Mycobacteriaceae and Neisseriaceae

Luke B. Harrison, Juba O. Ahmed, Gnéré Coulibaly, Frédéric J. Veyrier

This study benchmarks reference-based metagenomic tools for species-level detection in closely related bacterial families, finding metapresence and sylph perform best.

DOI 10.1128/msystems.00444-26

bacteria (other)metagenomics

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