Author

Judith S. Rodriguez

Pennsylvania State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:matrix factorization· 1 Assay:metagenomics· 1

Frequent Co-Authors

David KoslickiiD· 2 shared Mahmudur Rahman HeraiD· 2 shared Chunyu MaiD· 1 shared Shaopeng LiuiD· 1 shared Wei WeiiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

David KoslickiORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Leveraging FracMinHash Containment for Genomic dN/dS

Judith S. Rodriguez, Mahmudur Rahman Hera, David Koslicki

This paper introduces FracMinHash dN/dS, an alignment-free method to estimate dN/dS ratios across genomes, showing it is scalable and comparable to traditional methods.

bioRxiv · Nov 12, 2025 · PreprintBioinformatics

Fast, lightweight, and accurate metagenomic functional profiling using FracMinHash sketches

Mahmudur Rahman Hera, Shaopeng Liu, Wei Wei, Judith S. Rodriguez, Chunyu Ma, David Koslicki

This paper introduces fmh-funprofiler, a fast and lightweight metagenomic functional profiler using FracMinHash sketches, showing improved purity and speed compared to alignment-based methods.

bioRxiv · Nov 6, 2023 · PreprintBioinformatics