Author

K. M. Handley

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Research Focus:cell type annotation· 4 Assay:metagenomics· 4 Approach:experimental assay· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

E. Gios· 2 shared O. E. Mosley· 2 shared B. M. Slaby· 1 shared C. Cerrano· 1 shared C. Daughney· 1 shared C. Fourie· 1 shared C. T. Facimoto· 1 shared G. C. Wong· 1 shared

Activity by Year

2016-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 8 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersEvolutionary Biology

E. Gios

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Bacteroidia and Clostridia perform a progressive cascade of polysaccharide degradation along the hindgut of the herbivorous fish Kyphosus sydneyanus

C. T. Facimoto, K. D. Clements, W. L. White, K. M. Handley

This study identifies Bacteroidia and Clostridia as key players in polysaccharide degradation in the gut of Kyphosus sydneyanus, with Alistipes showing specialized capabilities for macroalgal biomass breakdown.

bioRxiv · Dec 23, 2023Microbiology

Genetic exchange shapes ultra-small Patescibacteria metabolic capacities in the terrestrial subsurface

E. Gios, O. E. Mosley, N. Takeuchi, K. M. Handley

The paper investigates genetic exchange in Patescibacteria genomes from aquifer environments, finding extensive horizontal gene transfer contributing to metabolic diversity.

bioRxiv · Oct 5, 2022 · PreprintEvolutionary Biology

Metabolic diversity and aero-tolerance in anammox bacteria from geochemically distinct aquifers

O. E. Mosley, E. Gios, L. Weaver, M. Close, C. Daughney, R. van der Raaij, H. Martindale, K. M. Handley

The paper investigates anammox bacteria diversity and activity across different aquifer conditions, finding they are prevalent and influenced by dissolved oxygen levels.

bioRxiv · Sep 16, 2021Microbiology

Effect of dietary zinc supplementation on the gastrointestinal microbiota and host gene expression in the Shank3B-/- mouse model of autism spectrum disorder

G. C. Wong, Y. Jung, K. Lee, C. Fourie, K. M. Handley, J. M. Montgomery, M. W. Taylor

This study examines how dietary zinc affects the gut microbiota and host gene expression in Shank3B-/- mice, showing changes in microbial communities and host metabolism linked to autism-like behaviors.

bioRxiv · Sep 9, 2021 · PreprintMicrobiology

Rethinking symbiotic metabolism: trophic strategies in the microbiomes of different sponge species

I. Burgsdorf, S. Sizikov, V. Squatrito, M. Britstein, B. M. Slaby, C. Cerrano, K. M. Handley, L. Steindler

This study examines carbon fixation strategies in sponge microbiomes, showing that symbionts use different metabolic pathways and that sequencing data alone cannot predict their contributions to carbon fixation.

bioRxiv · Aug 28, 2021 · PreprintMicrobiology

Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill

K. M. Handley, P. M. Yvette, P. Hu, L. M. Tom, O. U. Mason, G. L. Andersen, J. K. Jansson, J. A. Gilbert

The paper examines the metabolic and taxonomic responses of uncultivated seafloor bacteria after the Deepwater Horizon oil spill, identifying genes and expression patterns related to hydrocarbon degradation.

bioRxiv · Oct 31, 2016Microbiology