Author

Karynne E. Patterson

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Caitlin N. JacquesiD· 2 shared Christina ZakarianiD· 2 shared Danny E. MilleriD· 2 shared Jonas A. GustafsoniD· 2 shared Joy GoffenaiD· 2 shared Sophie H. R. StorziD· 2 shared Adrienne HellandiD· 1 shared Akshay Kumar AvvaruiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersBioinformatics

Caitlin N. JacquesORCID

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2 papers

Recent·Most cited

A comprehensive assessment of tandem repeat genotyping methods for Nanopore long-read genomes

ELBAY E. ALIYEV, Akshay Kumar Avvaru, Wouter De Coster, Garrison M. Arner, Denis M. Nyaga, Sophia B Gibson, Ben Weisburd, Bida Gu, Claudia Gonzaga-Jauregui, Jonas A. Gustafson, Joy Goffena, Wayne E. Clarke, Evan E. Eichler, Theodore M. Nelson, Anthony A. Snead, , Harriet Dashnow

This paper benchmarks 7 TR genotyping tools using Nanopore long-read data, finding that no single tool is best across all metrics, and that sequence-level accuracy is crucial for clinical and population studies.

Genome biology · Aug 4, 2026Peer-reviewedBioinformatics

Benchmarking long-read variant sensitivity across ONT and PacBio platforms using known clinically reported variants in a cohort of critically ill newborns

Colby T. Marvin, Joseph M. Devaney, Kati J. Buckingham, Jessica Noya, Kathryn M. Shively, Caitlin N. Jacques, Miranda Galey, Sophie H. R. Storz, Joy Goffena, April S. Berlyoung, Karynne E. Patterson, Tristan S. Shaffer, Christina Zakarian, Sean R. McGee, Smith Jp, , Jessica X. Chong

medRxiv · Jul 10, 2026 · PreprintGenetic & Genomic Medicine