Author

Kasimir Noack

European Molecular Biology Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Adrian BachmanniD· 1 shared Albert LiiD· 1 shared Anandhi IyappaniD· 1 shared Anna M Glazek· 1 shared Anna M. SchwarziD· 1 shared Anna MankowskiiD· 1 shared Anthony FullamiD· 1 shared Carl HerrmanniD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Adrian BachmannORCID

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2 papers

Recent·Most cited

Metalog: curated and harmonised contextual data for global metagenomics samples

Michael Kuhn, Thomas Schmidt, Pamela Ferretti, Anna M Glazek, Shahriyar Mahdi Robbani, Wasiu A. Akanni, Anthony Fullam, Christian Schudoma, Ela Cetin, Mariam Hassan, Kasimir Noack, Anna M. Schwarz, Roman Thielemann, Leonie Thomas, Moritz von Stetten, , Peer Bork B

Metalog manually curates and harmonises contextual metadata for 110,733 metagenomic samples from humans, animals, ocean water and other environments, linked to taxonomic profiles and SPIRE genomes.

Nucleic Acids Research · Oct 31, 2025Peer-reviewedMicrobiology✦ In-depth digest

Prediction of context-specific regulatory programs and pathways using interpretable deep learning

Daria Doncevic, Carlos Ramirez Alvarez, Albert Li, Youcheng Zhang, Adrian Bachmann, Kasimir Noack, Carl Herrmann

The paper introduces COBRA, an interpretable deep learning model for scRNA-seq data that disentangles covariate effects, and demonstrates its application on interferon-stimulated mouse datasets.

bioRxiv · Nov 6, 2024 · PreprintBioinformatics