Author

Kylie Drake

Northern Arizona University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Organism:bacteria (other)· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Sara MaltinskyiD· 3 shared Talima PearsoniD· 3 shared Tara FurstenauiD· 3 shared Viacheslav Y. FofanoviD· 3 shared Alexander RobertsiD· 2 shared Ann Ross· 2 shared Candice Bolduc· 2 shared Ryann N. WhealyiD· 2 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersMicrobiology

Sara MaltinskyORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Longitudinal prevalence and co-carriage of pathogens associated with nursing home acquired pneumonia in three long-term care facilities

Ryann N. Whealy, Alexander Roberts, Tara Furstenau, Skylar Timm, Sara Maltinsky, Sydney J. Wells, Kylie Drake, Kayla Ramirez, Candice Bolduc, Ann Ross, Talima Pearson, Viacheslav Y. Fofanov

This study tracks prevalence and co-carriage of respiratory pathogens in nursing home residents, finding distinct colonization patterns and persistence differences.

PLOS Global Public Health · Aug 22, 2025Peer-reviewedMicrobiology

High-throughput targeted amplicon screening tool for characterizing intrahost diversity in Staphylococcus aureus directly from sample

Tara Furstenau, Ryann N. Whealy, Skylar Timm, Alexander Roberts, Sara Maltinsky, Sydney J. Wells, Kylie Drake, Ann Ross, Candice Bolduc, Talima Pearson, Viacheslav Y. Fofanov

This paper develops a low-cost amplicon sequencing assay to rapidly characterize Staphylococcus aureus intrahost diversity directly from samples, enabling transmission analysis without whole-genome sequencing.

Microbial Genomics · Jun 25, 2025Peer-reviewedGenomics

Population sequencing for diversity and transmission analyses

Talima Pearson, Tara Furstenau, Colin Wood, Vanessa Rigas, Kylie Drake, Jason W. Sahl, Sara Maltinsky, Bart J. Currie, Mark J. Mayo, Carina M. Hall, Paul Keim, Viacheslav Y. Fofanov

This paper introduces and validates population sequencing methods to analyze phylogenetic diversity in bacterial populations without haplotype reconstruction, demonstrating applications in tracking transmission and understanding pathogen dynamics.

Proceedings of the National Academy of Sciences · Jun 3, 2025Peer-reviewedEvolutionary Biology