Author

Li Lei

Lawrence Berkeley National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1 Assay:DNA methylation· 1 Organism:plant (other)· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Anna LipzeniD· 1 shared Bruno Contreras‐MoreiraiD· 1 shared Chunlin CheniD· 1 shared David L. Des MaraisiD· 1 shared Hoi Shan Kwan· 1 shared Jeremy SchmutziD· 1 shared Jerry W. JenkinsiD· 1 shared Joanne Eichenberger· 1 shared

Activity by Year

2014-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperEvolutionary Biology

Anna LipzenORCID

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2 papers

Recent·Most cited

From tiny to massive: exploring genome evolution in the model 1 grass genus Brachypodium

Chunlin Chen, Rubén Sancho, Miguel Rufo Campos, Bruno Contreras‐Moreira, Jeremy Schmutz, Jerry W. Jenkins, Kerrie Barry, Anna Lipzen, Maxim Koriabine, Joanne Eichenberger, Li Lei, John P. Vogel, David L. Des Marais, Pilar Catalán

This study presents chromosome-level assemblies of two perennial Brachypodium species, revealing genomic features like polyploidy and transposable element dynamics that shaped genome evolution.

bioRxiv · Jul 21, 2026 · PreprintEvolutionary Biology

A novel computational approach for genome-wide prediction of small RNAs in bacteria

LI Lei, Hoi Shan Kwan

This study develops a neural network model to predict small RNAs in bacteria using sequence and structural features, achieving high recall and specificity and identifying new sRNA candidates.

bioRxiv · Nov 19, 2014 · PreprintBioinformatics