Author

Joanne Eichenberger

Lawrence Berkeley National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:gene regulatory network inference· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:development & morphogenesis· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Kerrie BarryiD· 3 shared Anna LipzeniD· 2 shared Jeremy SchmutziD· 2 shared Jerry W. JenkinsiD· 2 shared Alex LiuiD· 1 shared Brandon D. JordaniD· 1 shared Bruno Contreras‐MoreiraiD· 1 shared Chunlin CheniD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersGenomics

Kerrie BarryORCID

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Author profile →

3 papers

Recent·Most cited

From tiny to massive: exploring genome evolution in the model 1 grass genus Brachypodium

Chunlin Chen, Rubén Sancho, Miguel Rufo Campos, Bruno Contreras‐Moreira, Jeremy Schmutz, Jerry W. Jenkins, Kerrie Barry, Anna Lipzen, Maxim Koriabine, Joanne Eichenberger, Li Lei, John P. Vogel, David L. Des Marais, Pilar Catalán

This study presents chromosome-level assemblies of two perennial Brachypodium species, revealing genomic features like polyploidy and transposable element dynamics that shaped genome evolution.

bioRxiv · Jul 21, 2026 · PreprintEvolutionary Biology

Legume genome structures and histories inferred from Cercis canadensis and Chamaecrista fasciculata genomes

Hyun Oh Lee, Jacob Stai, Qiaoji Xu, Thulani M. Hewavithana, Pratheesh Soman, Rabnoor Batra, Alex Liu, Brandon D. Jordan, Rachel Walstead, Jerry W. Jenkins, Melissa Williams, Jenell Webber, Jane Grimwood, John T. Lovell, Tomáš Brůna, , Steven B. Cannon

This study uses genome sequences from Cercis canadensis and Chamaecrista fasciculata to infer legume genome structures and histories, including the timing of whole genome duplications and the ancestral karyotype.

The Plant Journal · Jun 1, 2026Peer-reviewedGenomics

Comparative genomics of the extremophile Cryomyces antarcticus and other psychrophilic Dothideomycetes

Sandra V. Gomez-Gutierrez, Wily R Sic-Hernandez, Sajeet Haridas, Kurt M. LaButti, Joanne Eichenberger, Navneet Kaur, Anna Lipzen, Kerrie Barry, Stephen B. Goodwin, Michael Gribskov, Igor V. Grigoriev

The paper uses comparative genomics to analyze Cryomyces antarcticus and other psychrophilic fungi to identify genetic features associated with extremophilic traits.

Frontiers in Fungal Biology · Sep 6, 2024Peer-reviewedGenomics