Author

Lingwen Xu

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Assay:proteomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Bo WeniD· 1 shared Chris HsuiD· 1 shared Daniela Klaproth-AndradeiD· 1 shared Gwenneth Straub· 1 shared Justin Sanders· 1 shared Marina PominovaiD· 1 shared Melih YilmaziD· 1 shared Michael E. RiffleiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperMolecular Biology

Bo WenORCID

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1 paper

Recent·Most cited

Improvements to Casanovo, a deep learning de novo peptidesequencer

Gwenneth Straub, Varun Ananth, William E. Fondrie, Chris Hsu, Daniela Klaproth-Andrade, Marina Pominova, Michael E. Riffle, Justin Sanders, Bo Wen, Lingwen Xu, Melih Yilmaz, Michael J. MacCoss, Sewoong Oh, Wout Bittremieux, William Stafford Noble

The paper improves Casanovo, a deep learning de novo peptidesequencer, by enhancing interpretability, generalizing its use in database search, speeding up performance, and adding tools for adoption and result interpretation.

Journal of Proteome Research · Dec 30, 2025Peer-reviewedMolecular Biology