Author

Marina Pominova

University of AntwerpORCID 0009-0002-5449-3069Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:proteomics· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Wout BittremieuxiD· 2 shared Alireza NameniiD· 1 shared An StaesiD· 1 shared Bart Van PuyveldeiD· 1 shared Bo WeniD· 1 shared Caroline JachmanniD· 1 shared Caroline LennartssoniD· 1 shared Chris HsuiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersMolecular Biology

Wout BittremieuxORCID

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2 papers

Recent·Most cited

Improvements to Casanovo, a deep learning de novo peptidesequencer

Gwenneth Straub, Varun Ananth, William E. Fondrie, Chris Hsu, Daniela Klaproth-Andrade, Marina Pominova, Michael E. Riffle, Justin Sanders, Bo Wen, Lingwen Xu, Melih Yilmaz, Michael J. MacCoss, Sewoong Oh, Wout Bittremieux, William Stafford Noble

The paper improves Casanovo, a deep learning de novo peptidesequencer, by enhancing interpretability, generalizing its use in database search, speeding up performance, and adding tools for adoption and result interpretation.

Journal of Proteome Research · Dec 30, 2025Peer-reviewedMolecular Biology

ProteoBench: the community-curated platform for comparing proteomics data analysis workflows

Robbe Devreese, Caroline Jachmann, Bart Van Puyvelde, Holda A. Anagho, Witold Wolski, Henry Emanuel Webel, Matthias Mattanovich, Wout Bittremieux, Karima Chaoui, Cristina Chiva, Tine Claeys, Hector Mauricio Castaneda Cortes, Simon Devos, Maarten Dhaenens, Nadezhda T. Doncheva, , Marie Locard‐Paulet

ProteoBench provides a centralized platform for comparing proteomics data analysis workflows, enabling benchmarking and community collaboration.

bioRxiv · Dec 20, 2025 · PreprintBioinformatics