Author

Lisa M. Freimark

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:long-read sequencing· 1 Assay:metagenomics· 1

Frequent Co-Authors

Gordon C. AdamsiD· 2 shared Jacob E. LemieuxiD· 2 shared Pardis Christine SabetiiD· 2 shared Alexander ArvanitisiD· 1 shared Ali A Djarou· 1 shared Allen C. SteereiD· 1 shared Anne L PiantadosiiD· 1 shared Ashlee M. EarliD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersMicrobiology

Gordon C. AdamsORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Linkage blocks involving multiple replicons organize Borrelia burgdorferi strain variation and influence virulence in Lyme disease

R Laing, Michael Joshua Foster, M. Amine Hassani, Ben Kotzen, Alexander Arvanitis, Weihua Huang, Terrence Shea, Ali A Djarou, Gordon C. Adams, Stephen F. Schaffner, Tjasa Cerar, Lisa M. Freimark, Eva Ružić‐Sabljić, Dionysios Liveris, Radha Iyer, , Jacob E. Lemieux

This study uses long-read assemblies to show that genetic modules across multiple plasmids organize Borrelia burgdorferi strain variation and influence virulence in Lyme disease.

bioRxiv · Jan 29, 2025 · PreprintMicrobiology

Enhanced virus detection and metagenomic sequencing in patients with meningitis and encephalitis

Anne L Piantadosi, Shibani S. Mukerji, Simon H. Ye, Michael J. Leone, Lisa M. Freimark, Daniel J. Park, Gordon C. Adams, Jacob E. Lemieux, Sanjat Kanjilal, Isaac H. Solomon, Asim A. Ahmed, Robert H. Goldstein, Vijay Ganesh, Bridget Ostrem, Kaelyn C. Cummins, , Pardis Christine Sabeti

This study uses metagenomic sequencing to detect pathogens in CNS infections, identifying novel pathogens and improving detection methods.

mBio · Aug 31, 2021Peer-reviewedNeuroscience