Author

Luoxi Zhang

Shenzhen University of Advanced Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:large language model· 1

Frequent Co-Authors

Min Yang· 2 shared Shiwen NiiD· 2 shared Ahmadreza ArghaiD· 1 shared Chen Jin· 1 shared Chengguang GaniD· 1 shared Hamid Alinejad-RoknyiD· 1 shared Hui Li· 1 shared iarui Jin· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Min Yang

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2 papers

Recent·Most cited

Benchmarking single-cell foundation models for aging biology

Xiaomin Ni, Yunhao Liang, Jialin Zhu, Luoxi Zhang, Shen Xingyu, Min Yang, Xu Ruifeng, Hui Li, Rongrong Ji, Chen Jin, Shiwen Ni

This study benchmarks single-cell foundation models for aging biology, finding that Geneformer excels in age prediction and pseudotime concordance, while SCimilarity outperforms others in rare state identification.

bioRxiv · Sep 27, 2026 · PreprintBioinformatics

Decoding Prokaryotic Whole Genomes with a Product-Contextualized Large Language Model

Shiwen Ni, Shuaimin Li, Shijian Wang, Wenzhi Xue, Luoxi Zhang, Liyang Fan, Xinping Bi, Yitai Li, Chengguang Gan, iarui Jin, Yuan Lu, Ahmadreza Argha, Hamid Alinejad-Rokny, Tong Si, Min Yang, Teng Wang

The paper introduces GenSyntax, a large language model for prokaryotic genomes that captures functional context, achieving competitive performance in genome-scale tasks.

bioRxiv · Aug 9, 2026 · PreprintGenomics