Author

M. Avino

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:drug response / drug discovery· 1 Approach:machine learning (classical)· 1 Approach:simulation· 1

Frequent Co-Authors

A. F. Poon· 3 shared A. S. Olabode· 2 shared A. A. Meadows· 1 shared B. R. Jones· 1 shared C. M. Kityo· 1 shared D. J. Lizotte· 1 shared D. W. Dick· 1 shared E. J. Arts· 1 shared

Activity by Year

2018-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersEvolutionary Biology

A. F. Poon

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Author profile →

3 papers

Recent·Most cited

Detection of novel HIV-1 drug resistance mutations by support vector analysis of deep sequence data and experimental validation

M. Avino, E. Ndashimye, D. J. Lizotte, A. S. Olabode, R. M. Gibson, A. A. Meadows, C. M. Kityo, E. Nabulime, F. Kyeyune, I. Nankya, M. E. Quinones-Mateu, E. J. Arts, A. F. Poon

This study identifies novel HIV-1 drug resistance mutations in non-subtype B infections using deep sequencing, SVM analysis, and experimental validation.

bioRxiv · Oct 14, 2019 · PreprintMicrobiology

Tree Shape-based approaches for the Comparative study of Cophylogeny

M. Avino, G. T. Ng, Y. He, M. S. Renaud, B. R. Jones, A. F. Poon

This paper evaluates tree shape distance metrics to quantify cophylogeny in host-pathogen interactions and identifies metrics that best capture coevolutionary parameters.

bioRxiv · Aug 9, 2018Evolutionary Biology

Evidence for a Recombinant Origin of HIV-1 group M from Genomic Variation

A. S. Olabode, M. Avino, T. Ng, F. Abu-Sardanah, D. W. Dick, A. F. Poon

This study uses a sliding window approach on HIV-1/M genome sequences to detect recombination breakpoints and estimate the origin of the pandemic, finding evidence of early recombination events.

bioRxiv · Jul 6, 2018Evolutionary Biology