M. Baudis

In Search of the Perfect Model: How Cancer Cell Lines Relate to Native Cancers

This study compares cancer cell lines to native cancers using CNV profiles and ML to identify cell lines that best represent specific cancer types.

Short tandem repeat mutations regulate gene expression in colorectal cancer

This study identifies 1244 expression STRs (eSTRs) in colorectal cancer, showing their association with gene expression and mutability in MSI tumors, suggesting potential therapeutic targets.

Candidate targets of copy number deletion events across 17 cancer types

This study identifies gene targets of copy number deletions across 17 cancer types using segmental breakpoints and shows common and cancer-specific pathways affected.

Copy number variant heterogeneity among cancer types reflects inconsistent concordance with diagnostic classifications

The paper evaluates the concordance of two cancer classification systems with genomic mutation patterns using copy number aberration data from 83,505 cancer samples.

The Progenetix oncogenomic resource in 2021

The paper updates the Progenetix resource with expanded cancer copy number variation data, improved quality, and enhanced data access tools.

DNA copy number imbalances in primary cutaneous lymphomas (PCL)

This study performs a meta-analysis of copy number variations in primary cutaneous lymphomas to identify genomic imbalances that distinguish subtypes.