M. Vazquez-Valls

Leveraging Natural Language Processing models to decode the dark proteome across the Animal Tree of Life

This paper introduces FANTASIA, a tool using protein language models to annotate functions for thousands of animal proteomes, uncovering previously unknown functions across species.

MATEdb2, a collection of high-quality metazoan proteomes across the Animal Tree of Life to speed up phylogenomic studies

MATEdb2 provides high-quality proteomes for nearly 1000 animal species to enhance phylogenomic research by reducing computational effort and standardizing data formats.