Author

C. Vargas-Chavez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:bulk RNA-seq· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1

Frequent Co-Authors

G. I. Martinez-Redondo· 3 shared K. Eleftheriadi· 3 shared R. Fernandez· 3 shared M. Gut· 2 shared A. Alcaina· 1 shared A. de Mendoza· 1 shared A. Sanchez-Gracia· 1 shared A. Schmidt-Rhaesa· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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3 shared papersEvolutionary Biology

G. I. Martinez-Redondo

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Author profile →

5 papers

Recent·Most cited

MATEdb2, a collection of high-quality metazoan proteomes across the Animal Tree of Life to speed up phylogenomic studies

G. I. Martinez-Redondo, C. Vargas-Chavez, K. Eleftheriadi, L. Benitez-Alvarez, M. Vazquez-Valls, R. Fernandez

MATEdb2 provides high-quality proteomes for nearly 1000 animal species to enhance phylogenomic research by reducing computational effort and standardizing data formats.

bioRxiv · Feb 21, 2024Evolutionary Biology

The genome sequence of the Montseny horsehair worm, Gordionus montsenyensis sp. nov., a key resource to investigate Ecdysozoa evolution

K. Eleftheriadi, N. Guiglielmoni, J. Salces-Ortiz, C. Vargas-Chavez, G. I. Martinez-Redondo, M. Gut, J.-F. Flot, A. Schmidt-Rhaesa, R. Fernandez

The paper presents the chromosome-level genome assembly of a newly described Nematomorpha species, providing genomic resources for studying Ecdysozoa evolution and parasitic lifestyles.

bioRxiv · Jun 26, 2023Evolutionary Biology

MATEdb, a data repository of high-quality metazoan transcriptome assemblies to accelerate phylogenomic studies

R. Fernandez, V. Tonzo, C. Simon Guerrero, J. Lozano-Fernandez, G. I. Martinez-Redondo, P. Balart-Garcia, L. Aristide, K. Eleftheriadi, C. Vargas-Chavez

MATEdb provides a curated database of high-quality transcriptome assemblies from metazoan species to improve phylogenomic studies by standardizing analysis pipelines and reducing computational costs.

bioRxiv · Jul 18, 2022Evolutionary Biology

Coordination between growth and stress responses by DELLA in the liverwort Marchantia polymorpha

J. Hernandez-Garcia, R. Sun, A. Serrano-Mislata, K. Inoue, C. Vargas-Chavez, D. Esteve-Bruna, V. Arbona, S. Yamaoka, R. Nishihama, T. Kohchi, M. A. Blazquez

This study shows that DELLA in the liverwort Marchantia polymorpha coordinates growth and stress responses, similar to vascular plants, and interacts with MpPIF to promote oxidative stress tolerance.

bioRxiv · Feb 11, 2021Plant Biology

Genomic adaptations to aquatic and aerial life in mayflies and the origin of wings in insects

I. Almudi, J. Vizueta, A. de Mendoza, C. Wyatt, F. Marletaz, P. Firbas, R. Feuda, G. Masiero, P. Medina, A. Alcaina, F. Cruz, J. Gomez-Garrido, M. Gut, T. S. Alioto, C. Vargas-Chavez, , F. Casares

This study analyzes the genome and gene expression of mayflies to uncover genomic adaptations related to aquatic and aerial life and the origin of wings in insects.

bioRxiv · Dec 29, 2019Evolutionary Biology