Author

Madhavi Ganapathiraju

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:protein folding & dynamics· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam Roth· 1 shared Aman Gupta· 1 shared Haohan Wang· 1 shared Sandeep Subramanian· 1 shared

Activity by Year

2015-2015 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 2 mutual co-author links

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1 shared paperBioinformatics

Adam Roth

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 16, 2015

Learning structure in gene expression data using deep architectures, with an application to gene clustering

Aman Gupta, Haohan Wang, Madhavi Ganapathiraju

The paper applies deep learning architectures to gene expression data for clustering, showing improved performance on two datasets.

DOI 10.1101/031906

bulk RNA-seqdeep learning

𝕏 PostBluesky

BioinformaticsbioRxivNov 14, 2015

Towards extracting supporting information about predicted protein-protein interactions

Adam Roth, Sandeep Subramanian, Madhavi Ganapathiraju

The paper introduces UPSITE, a tool that extracts supporting evidence for predicted protein-protein interactions by analyzing biomedical literature and calculating semantic similarity.

DOI 10.1109/tcbb.2015.2505278

proteomicsdeep learning

𝕏 PostBluesky