Author

Michael Vilkhovoy

Primary ORCID profile (0000-0002-9831-7625 · 4 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Michael VilkhovoyiD4 papers · Cornell University

Biology Disciplines

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Systems Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Organism:E. coli· 1 Approach:optimal transport· 1 Approach:statistical model· 1

Frequent Co-Authors

Mason Minot· 2 shared David Bassen· 1 shared Jeffrey D Varner· 1 shared Jeffrey Varner· 1 shared Jonathan T Butcher· 1 shared

Activity by Year

2016-2016 · peak 2/yr

Co-Author Collaboration Network

5 top collaborators · 7 mutual co-author links

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2 shared papersSystems Biology

Mason Minot

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2 papers

Recent·Most cited

Effective Dynamic Models of Metabolic Networks

Michael Vilkhovoy, Mason Minot, Jeffrey Varner

This study introduces HCM-FBA, a dynamic modeling approach for metabolic networks that replaces elementary modes with flux balance analysis, enabling efficient modeling of large networks like aerobic E. coli metabolism.

bioRxiv · Aug 31, 2016Systems Biology

JuPOETs: A Constrained Multiobjective Optimization Approach to Estimate Biochemical Model Ensembles in the Julia Programming Language

David Bassen, Michael Vilkhovoy, Mason Minot, Jonathan T Butcher, Jeffrey D Varner

JuPOETs estimates biochemical model ensembles using constrained multiobjective optimization, achieving faster performance than Octave on test functions and providing parameter sets that balance conflicting training objectives.

bioRxiv · May 30, 2016Systems Biology