Author

Mihkel Vaher

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Andres SalumetsiD· 1 shared Hindrek TederiD· 1 shared Kaarel KrjutškoviD· 1 shared Kairi RaimeiD· 1 shared Lauris KaplinskiiD· 1 shared Maarja Lepamets· 1 shared Maido RemmiD· 1 shared Märt MölsiD· 1 shared

Activity by Year

2016-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Andres SalumetsORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Honey bulk DNA metagenomic analysis to identify honey biological composition and monitor honey bee pathogens

Priit Paluoja, Mihkel Vaher, Hindrek Teder, Kaarel Krjutškov, Andres Salumets, Kairi Raime

This study uses bulk DNA metagenomic analysis of honey samples to identify biological composition and detect honey bee pathogens and parasites.

npj Science of Food · May 30, 2025Peer-reviewedGenomics

StrainSeeker: fast identification of bacterial strains from unassembled sequencing reads using user-provided guide trees.

Märt Roosaare, Mihkel Vaher, Lauris Kaplinski, Märt Möls, Reidar Andreson, Maarja Lepamets, Triinu Kõressaar, Paul Naaber, Siiri Kõljalg, Maido Remm

StrainSeeker identifies bacterial strains from unassembled sequencing reads using guide trees, successfully detecting Escherichia coli strains in mixed samples within 5 minutes.

bioRxiv · Feb 19, 2016 · PreprintBioinformatics