Author

Mikhail Raiko

St Petersburg University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:human· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexandru Ioan TomescuiD· 1 shared Alla Lapidus· 1 shared Andrey D. Prjbelski· 1 shared Dmitry Antipov· 1 shared Dmitry MeleshkoiD· 1 shared Hagen TilgneriD· 1 shared Iman HajirasoulihaiD· 1 shared Max Shen· 1 shared

Activity by Year

2016-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Alexandru Ioan TomescuORCID

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2 papers

Recent·Most cited

cloudrnaSPAdes: Isoform assembly using bulk barcoded RNA sequencing data

Dmitry Meleshko, Andrey D. Prjbelski, Mikhail Raiko, Alexandru Ioan Tomescu, Hagen Tilgner, Iman Hajirasouliha

cloudrnaSPAdes assembles full-length isoforms from barcoded RNA-seq linked-read data, accurately handling high isoform diversity in simulated and real human data.

Bioinformatics · Jan 18, 2024Peer-reviewedBioinformatics

plasmidSPAdes: Assembling Plasmids from Whole Genome Sequencing Data

Dmitry Antipov, Nolan Hartwick, Max Shen, Mikhail Raiko, Alla Lapidus, Pavel Pevzner

The paper introduces plasmidSPAdes, a tool for assembling plasmids from whole genome sequencing data, and benchmarks its performance on bacterial genomes.

bioRxiv · Apr 20, 2016Bioinformatics