Accounting for longitudinal peak quality metrics with MSstats+ enhances differential analysis in proteomic experiments with data-independent acquisition
Devon Kohler, Eralp Doğu, Mrittika Bhattacharya, Özge Karayel, Manuel Magana, Anthony Wu, Veronica G. Anania, Olga Vitek A
MSstats+ improves differential protein analysis in proteomic experiments by incorporating longitudinal quality metrics to reduce false positives from poor-quality measurements.
bioRxiv · Sep 11, 2025 · PreprintBioinformatics