Author

Muhui Ye

Chinese University of Hong Kong, Shenzhen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Organism:human· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Fengwei ZhangiD· 1 shared Hong Jie YuiD· 1 shared James C. GumbartiD· 1 shared Jerry M. ParksiD· 1 shared Katie M. KuoiD· 1 shared Maximilian BrogiiD· 1 shared Xianwei YeiD· 1 shared Y WangiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Fengwei ZhangORCID

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Author profile →

2 papers

Recent·Most cited

Benchmarking AI Protein Structure Predictors Reveals a Persistent Bias in Multi-State Proteins

Muhui Ye, Y Wang, Maximilian Brogi, Jerry M. Parks, Katie M. Kuo, James C. Gumbart

This study benchmarks AI protein structure predictors on multi-state proteins, revealing persistent biases in capturing conformational ensembles and ligand interactions.

bioRxiv · Jul 11, 2026 · PreprintBiophysics

Taxonomical and ontological analysis of verified natural and laboratory human coronavirus hosts

Yang Wang, Muhui Ye, Fengwei Zhang, Zachary Thomas Freeman, Hong Jie Yu, Xianwei Ye, Yongqun Oliver He

The paper identifies and analyzes hosts of human coronaviruses, finding all verified natural and laboratory hosts are therian mammals, and provides a standardized ontology for host knowledge.

bioRxiv · Feb 5, 2023 · PreprintBioinformatics