Resistome SNP Calling via Read Colored de Bruijn Graphs
Bahar Alipanahi, Martin D. Muggli, Musa A. Jundi, Noelle Robertson Noyes, Christina A. Boucher
The paper introduces LueVari, a reference-free SNP caller for metagenomic data that reliably detects SNPs in AMR genes across varying coverage levels.
bioRxiv · Apr 18, 2018 · PreprintBioinformatics