Author

Martin D. Muggli

Colorado State UniversityORCID 0000-0002-9283-0049Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:variant calling· 3 Organism:bacteria (other)· 1 Organism:E. coli· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Assay:metagenomics· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Christina A. BoucheriD· 4 shared Bahar AlipanahiiD· 3 shared Leena SalmelaiD· 2 shared Darshan Washimkar· 1 shared Kingshuk MukherjeeiD· 1 shared Musa A. Jundi· 1 shared Noelle Robertson NoyesiD· 1 shared Simon J. PuglisiiD· 1 shared

Activity by Year

2016-2019 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 16 mutual co-author links

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4 shared papersBioinformatics

Christina A. BoucherORCID

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Author profile →

4 papers

Recent·Most cited

Building Large Updatable Colored de Bruijn Graphs via Merging

Martin D. Muggli, Bahar Alipanahi, Christina A. Boucher

The paper introduces an algorithm to merge succinct de Bruijn graph representations, enabling efficient construction of large colored de Bruijn graphs with reduced space usage.

Bioinformatics · Jun 4, 2019Peer-reviewedBioinformatics

Error Correcting Optical Mapping Data

Kingshuk Mukherjee, Darshan Washimkar, Martin D. Muggli, Leena Salmela, Christina A. Boucher

The paper introduces cOMet, an error correction method for optical mapping data, which improves the accuracy of Rmap data and enhances genome assembly quality.

GigaScience · May 25, 2018Peer-reviewedBioinformatics

Resistome SNP Calling via Read Colored de Bruijn Graphs

Bahar Alipanahi, Martin D. Muggli, Musa A. Jundi, Noelle Robertson Noyes, Christina A. Boucher

The paper introduces LueVari, a reference-free SNP caller for metagenomic data that reliably detects SNPs in AMR genes across varying coverage levels.

bioRxiv · Apr 18, 2018 · PreprintBioinformatics

Disentangled Long-Read De Bruijn Graphs via Optical Maps

Bahar Alipanahi, Leena Salmela, Simon J. Puglisi, Martin D. Muggli, Christina A. Boucher

The paper disentangles de Bruijn graphs using optical maps to improve long-read assembly efficiency and accuracy.

bioRxiv · Dec 14, 2016 · PreprintBioinformatics