Author

Naoki Shibata

Takara BIO Inc. (Japan)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Molecular Biology· 5

Signature Assays, Organisms & Methods

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Assay:metagenomics· 5 Approach:statistical model· 3 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Research Focus:phylogenetics / evolution· 2

Frequent Co-Authors

Satsuki TsujiiD· 5 shared Katsutoshi WatanabeiD· 2 shared Ryohei NakaoiD· 1 shared Ryutei Inui· 1 shared Tetsu YatsuyanagiiD· 1 shared Yoshihisa AKAMATSU· 1 shared Yugo MiuchiiD· 1 shared Yusuke FukeiD· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 15 mutual co-author links

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5 shared papersMolecular Biology

Satsuki TsujiORCID

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5 papers

Recent·Most cited

High-resolution insights into the geographic differentiation and hybridisation of Odontobutis gobies through integrated eDNA and SNP analyses

Satsuki Tsuji, Yugo Miuchi, Naoki Shibata, Katsutoshi Watanabe

This study uses integrated eDNA and SNP analyses to reveal geographic differentiation and hybridization in Odontobutis gobies, showing hybrid origin of O. hikimius.

Freshwater Biology · Jun 30, 2026Peer-reviewedMolecular Biology

A Practical and Cost-Effective Approach to Long-Fragment eDNA Sequencing for High-Resolution Genetic Diversity Assessment

Satsuki Tsuji, Naoki Shibata, Tetsu Yatsuyanagi, Yusuke Fuke

This paper develops a low-cost method for long-fragment eDNA sequencing to assess genetic diversity, finding it effective for high-resolution phylogeographic analysis.

Metabarcoding and Metagenomics · Jun 16, 2026Peer-reviewedMolecular Biology

Particle size distribution shift and diurnal concentration changes of environmental DNA caused by fish spawning behaviour

Satsuki Tsuji, Naoki Shibata

This study examines changes in eDNA particle size distribution and concentrations during Ayu fish spawning, showing increased sperm-derived eDNA and diurnal concentration peaks, which can enhance eDNA-based spawning detection.

Landscape and Ecological Engineering · Nov 18, 2024Peer-reviewedMolecular Biology

Environmental DNA phylogeography: successful reconstruction of phylogeographic patterns of multiple fish species from a cup of water

Satsuki Tsuji, Naoki Shibata, Ryutei Inui, Ryohei Nakao, Yoshihisa AKAMATSU, Katsutoshi Watanabe

This study demonstrates that eDNA analysis can accurately reconstruct phylogeographic patterns of multiple fish species from water samples, reducing the effort required for traditional phylogeographic surveys.

Molecular Ecology Resources · Mar 7, 2023Peer-reviewedMolecular Biology

Identifying spawning activity in aquatic species based on environmental DNA spikes

Satsuki Tsuji, Naoki Shibata

The paper demonstrates that spikes in environmental DNA (eDNA) concentration can indicate spawning activity in aquatic species, specifically showing that eDNA spikes are caused by sperm release during spawning.

bioRxiv · Jan 28, 2020 · PreprintMolecular Biology