Author

Nimisha Papineni

Stony Brook University

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Biology Disciplines

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Bioinformatics· 1

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Approach:contrastive learning· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Han Liu· 1 shared Pallavi SuranaiD· 1 shared Pratik DuttaiD· 1 shared Ramana V. DavuluriiD· 1 shared Rekha SathianiD· 1 shared Zhihan Zhou· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Han Liu

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1 paper

Recent·Most cited

TSProm: Deciphering the Genomic Context of Tissue Specificity

Pallavi Surana, Pratik Dutta, Nimisha Papineni, Rekha Sathian, Zhihan Zhou, Han Liu, Ramana V. Davuluri

TSProm identifies tissue-specific gene regulatory elements by training specialized DNA models and using explainable AI to analyze promoter sequences in human tissues.

NAR Genomics and Bioinformatics · Mar 27, 2026Peer-reviewedBioinformatics