Implementation of an Open Source Software solution for Laboratory Information Management and automated RNAseq data analysis in a large-scale Cancer Genomics initiative using BASE with extension package Reggie.
Jari Häkkinen, Nicklas Nordborg, Olle Månsson, Johan Vallon-Christersson
The paper describes an open-source system using BASE and Reggie for managing cancer genomics data and automating RNAseq analysis in a clinical setting, achieving efficient processing and short lead-times.
bioRxiv · Apr 12, 2016 · PreprintBioinformatics