Author

Omar Y Ahmed

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Ben LangmeadiD· 1 shared Christina BoucheriD· 1 shared Massimiliano RossiiD· 1 shared Travis GagieiD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Ben LangmeadORCID

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1 paper

Recent·Most cited

BioinformaticsGenome BiologyPeer-reviewedMay 18, 2023

SPUMONI 2: Improved pangenome classification using a compressed index of minimizer digests

Omar Y Ahmed, Massimiliano Rossi, Travis Gagie…·Ben Langmead

SPUMONI 2 improves pangenome classification by using a compressed index of minimizer digests, achieving faster speed, lower memory use, and better performance for short and long reads.

DOI 10.1186/s13059-023-02958-1

long-read sequencingstatistical model

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