Author

Open2C

University of Massachusetts Chan Medical School

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:Hi-C· 2 Research Focus:software / tool· 2 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Aleksandra A. GalitsynaiD· 3 shared Anton A. GoloborodkoiD· 3 shared Geoffrey FudenbergiD· 3 shared Ilya M. FlyameriD· 3 shared Maxim ImakaeviD· 3 shared Nezar A. AbdennuriD· 3 shared Sergey V. VeneviD· 3 shared Betül Akgöl OksuziD· 1 shared

Activity by Year

2024-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Aleksandra A. GalitsynaORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Pairtools: from sequencing data to chromosome contacts

Open2C, Nezar A. Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton A. Goloborodko, Maxim Imakaev, Sergey V. Venev

Pairtools processes sequencing data into contact pairs for 3C+ analysis, offering high-performance and flexible tools for various protocols.

PLoS Computational Biology · May 29, 2024Peer-reviewedBioinformatics

Cooltools: enabling high-resolution Hi-C analysis in Python

Open2C, Nezar A. Abdennur, Sameer Abraham, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton A. Goloborodko, Maxim Imakaev, Betül Akgöl Oksuz, Sergey V. Venev, Yao Xiao

Cooltools provides scalable and flexible analysis tools for high-resolution Hi-C data, addressing challenges in storage, memory, and customization.

PLoS Computational Biology · May 6, 2024Peer-reviewedBioinformatics

Bioframe: Operations on Genomic Intervals in Pandas Dataframes

Open2C, Nezar A. Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton A. Goloborodko, Maxim Imakaev, Sergey V. Venev

Bioframe provides a Python library for efficient genomic interval operations using pandas dataframes, extending the data science stack for computational genomics.

Bioinformatics · Feb 1, 2024Peer-reviewedBioinformatics