gplasCC: classification and reconstruction of plasmids from short-read sequencing data for any bacterial species
Julián Paganini, Jesse J. Kerkvliet, Gijs Teunis, Oscar Jordan, Nienke L. Plantinga, Rodrigo Silva Meneses, Rob J. L. Willems, Sergio Arredondo-Alonso, Anita C. Schürch
gplasCC classifies and reconstructs plasmids from short-read sequencing data across multiple bacterial species using simplified plasmidEC and species-specific databases.
bioRxiv · Nov 28, 2024 · PreprintBioinformatics