Metagenomic Next-Generation Sequencing of Rectal Swabs for the Surveillance of Antimicrobial Resistant Organisms on the Illumina Miseq and Oxford MinION Platforms
R. Yee, F. P. Breitwieser, S. Hao, B. N. A. Opene, R. E. Workman, P. D. Tamma, J. Dien Bard, W. Timp, P. J. Simner
This study evaluates mNGS on Illumina MiSeq and Nanopore MinION platforms for detecting MDRO in rectal swabs, showing concordance with culture results and highlighting advantages of both short and long-read approaches.
European Journal of Clinical Microbiology & Infectious Diseases · Aug 11, 2020Peer-reviewedMicrobiology