Author

P. Fordyce

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1 Research Focus:software / tool· 1

Frequent Co-Authors

A. K. Aditham· 1 shared A. M. Keys· 1 shared B. Harink· 1 shared D. D. Le· 1 shared H. Nguyen· 1 shared K. Thorn· 1 shared T. C. Shimko· 1 shared Y. Orenstein· 1 shared

Activity by Year

2017-2018 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 13 mutual co-author links

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1 shared paperBiophysics

A. K. Aditham

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2 papers

Recent·Most cited

An open-source software analysis package for Microspheres with Ratiometric Barcode Lanthanide Encoding (MRBLEs)

B. Harink, H. Nguyen, K. Thorn, P. Fordyce

The paper introduces an open-source Python package for analyzing MRBLEs data, enabling bead detection, fluorescence quantification, and spectral code identification in multiplexed assays.

bioRxiv · Aug 28, 2018Bioengineering

Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding

D. D. Le, T. C. Shimko, A. K. Aditham, A. M. Keys, Y. Orenstein, P. Fordyce

The paper measures TF-DNA binding energies for yeast TFs using a novel sequencing assay and finds that flanking mutations significantly affect binding energy, challenging current site definitions.

bioRxiv · Sep 26, 2017Biophysics