Author

P. Mabee

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Evolutionary Biology· 5

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Research Focus:benchmarking· 3 Research Focus:cell type annotation· 3 Approach:deep learning· 3 Approach:statistical model· 3 Research Focus:clustering· 2 Research Focus:database / resource· 2 Assay:imaging· 2 Organism:multiple species· 2

Frequent Co-Authors

W. Dahdul· 5 shared H. Lapp· 3 shared J. Balhoff· 3 shared T. Vision· 3 shared A. Karpatne· 2 shared H. L. Bart· 2 shared J. Greenberg· 2 shared J. Leipzig· 2 shared

Activity by Year

2019-2023 · peak 2/yr

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10 top collaborators · 25 mutual co-author links

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5 shared papersEvolutionary Biology

W. Dahdul

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5 papers

Recent·Most cited

rphenoscate: An R package for semantic-aware evolutionary analyses of anatomical traits

D. Porto, S. Tarasov, C. Charpentier, H. Lapp, J. Balhoff, T. Vision, W. Dahdul, P. Mabee, J. Uyeda

The paper introduces an R package, rphenoscate, that integrates ontological knowledge into evolutionary analyses of morphological traits and demonstrates its utility with data from bees and fishes.

bioRxiv · Feb 19, 2023Evolutionary Biology

Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge from Anatomy Ontologies

D. Sasso Porto, W. Dahdul, H. Lapp, J. Balhoff, T. Vision, P. Mabee, J. Uyeda

This paper evaluates how anatomical ontologies structure phylogenetic information in morphological data using Bayesian phylogenetic information metrics across two animal groups.

Systematic Biology · Oct 12, 2022Peer-reviewedEvolutionary Biology

Biodiversity Image Quality Metadata Augments Convolutional Neural Network Classification of Fish Species

J. Leipzig, Y. Bakis, X. Wang, M. Elhamod, K. Diamond, W. Dahdul, A. Karpatne, M. Maga, P. Mabee, H. L. Bart, J. Greenberg

This study shows that image quality metadata improves fish species classification by CNNs, with high-quality images achieving higher F1 accuracy than low-quality ones.

bioRxiv · Jan 28, 2021 · PreprintEvolutionary Biology

Hierarchy-guided Neural Networks for Species Classification

M. Elhamod, K. M. Diamond, A. M. Maga, Y. Bakis, H. L. Bart, P. Mabee, W. Dahdul, J. Leipzig, J. Greenberg, B. Avants, A. Karpatne

This paper introduces a hierarchy-guided neural network for species classification, showing improved accuracy and resilience to adversarial occlusions in fish species classification.

bioRxiv · Jan 17, 2021Evolutionary Biology

A logical model of homology for comparative biology

P. Mabee, J. Balhoff, W. Dahdul, H. Lapp, C. Mungall, T. Vision

The paper evaluates two logical models for representing homology in comparative biology using phenotypic data from vertebrate fins and limbs.

bioRxiv · Mar 26, 2019Evolutionary Biology