Author

P. Zuliani

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioengineering· 1 Biophysics· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 4 Approach:statistical model· 4 Research Focus:cell type annotation· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Research Focus:trajectory inference· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

B. Li· 5 shared A. S. McGough· 2 shared D. Taniguchi· 2 shared J. Chen· 2 shared M. Fuentes-Cabrera· 2 shared T. P. Curtis· 2 shared C. Robertson· 1 shared D. C. Ducat· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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5 shared papersMicrobiology

B. Li

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Computational Modelling of Immune Interaction and Epidermal Homeostasis in Psoriasis

D. Paramalingam, B. Li, N. J. Reynolds, P. Zuliani

This paper develops a 3D agent-based model of psoriasis to simulate immune cytokine-induced epidermal hyperproliferation and validate it against in vivo cell population data.

bioRxiv · Feb 23, 2023 · PreprintPhysiology

Predicting partner fitness based on spatial structuring in a light-driven microbial community

J. K. Sakkos, M. Santos-Merino, E. J. Kokarakis, B. Li, M. Fuentes-Cabrera, P. Zuliani, D. C. Ducat

The paper develops an in-silico model of a synthetic microbial consortium to predict colony fitness based on spatial structuring and metabolic exchange.

bioRxiv · Sep 28, 2022Bioengineering

Investigating the growth of an engineered strain of Cyanobacteria with an Agent-Based Model and a Recurrent Neural Network

J. Sakkos, J. Weaver, C. Robertson, B. Li, D. Taniguchi, K. Maheshwari, D. Ducat, P. Zuliani, A. S. McGough, T. P. Curtis, M. Fuentes-Cabrera

The paper develops a computational framework combining ABMs and RNNs to model and accelerate the growth of an engineered Cyanobacteria strain.

bioRxiv · Oct 11, 2021 · PreprintMicrobiology

Modelling bacterial twitching in fluid flows: a CFD-DEM approach

P. G. Jayathilake, B. Li, P. Zuliani, T. Curtis, J. Chen

This paper develops a CFD-DEM model to simulate bacterial twitching motility in shear flows and identifies optimal wall shear stress for efficient upstream movement.

bioRxiv · Jun 10, 2019Biophysics

NUFEB: A Massively Parallel Simulator for Individual-based Modelling of Microbial Communities

B. Li, D. Taniguchi, J. P. Gedara, V. Gogulancea, R. Gonzalez-Cabaleiro, J. Chen, A. S. McGough, I. D. Ofiteru, T. P. Curtis, P. Zuliani

NUFEB simulates microbial community dynamics using individual-based modeling, supporting large-scale simulations and detailed biological, chemical, and physical processes.

bioRxiv · May 24, 2019Microbiology